Test Microarray version 1

Slide Description

Slide Properties
Microarray Version	1
Number of Grids	24
Element Type	Amplicon
Surface Coating	Aminosilane
Oligonucleotides Designed	370
Replicate Oligo Printings	15x
Controls	0 Arabidopsis thaliana 70mers 14 Arabidopsis thaliana amplicons

Annotation Files

The PFGRC provides annotation information in the following formats:

Tab-delimited: Which can be opened with most commercial spreadsheet programs.
GenePix Array List (GAL) format: For use with the "GenePix Pro" application. More information about the GAL file format can be found here.
Ann format: For use with JCVI Spotfinder and JCVI MEV.
More information about the format of the annotation files can be found here.
The EASE TM4 archive is a zip file archive used in the TM4 suite of applications. More information about this file can be found here.

Strain	Tab-delimited Text File	.GAL File	.ANN File	EASE TM4 Archive
Streptococcus pneumoniae TIGR4	Download	Download	Download	None
Streptococcus pneumoniae G54	None	None	None	None
Streptococcus pneumoniae R6	None	None	None	None
Staphylococcus aureus COL	Download	Download	Download	None
Salmonella typhimurium LT2	Download	Download	Download	None

Spotfinder Parameters

The following parameters are for use with JCVI's supported microarray analysis TM4 suite. More information regarding Spotfinder can be found here.