Home  > Microarray  > Available Microarrays  > Streptococcus pneumoniae version 8

Streptococcus pneumoniae version 8

Slide Description

Slide Properties

Microarray Version

8

Number of Grids

48

Element Type

70mer Oligonucleotide

Surface Coating

Aminosilane

Oligonucleotides Designed

4057

Replicate Oligo Printings

4x

Controls

500 Arabidopsis thaliana 70mers

Annotation Files

The PFGRC provides annotation information in the following formats:

  • Tab-delimited: Which can be opened with most commercial spreadsheet programs.
  • GenePix Array List (GAL) format: For use with the "GenePix Pro" application. More information about the GAL file format can be found here.
  • Ann format: For use with JCVI Spotfinder and JCVI MEV.
  • More information about the format of the annotation files can be found here.
  • The EASE TM4 archive is a zip file archive used in the TM4 suite of applications. More information about this file can be found here.

Strain

Tab-delimited
Text File

.GAL File

.ANN File

EASE TM4
Archive

TIGR4

Download

Download

Download

None

R6

Download

Download

Download

None

G54

Download

Download

Download

None

Bacteriophage MM1

Download

Download

Download

None

Spotfinder Parameters

The following parameters are for use with JCVI's supported microarray analysis TM4 suite. More information regarding Spotfinder can be found here.

Spotfinder Property

Spotfinder Property

Meta Row

12

Meta Column

4

Pin X (pix)

450

Pin Y (pix)

450

Row Number

18

Column Number

18

X Spacing (pix)

23

Y Spacing (pix)

23

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