Home  > Microarray  > Available Microarrays  > Plasmodium vivax version 1

Plasmodium vivax version 1

Slide Description

Slide Properties

Microarray Version

1

Number of Grids

48

Element Type

60mer Oligonucleotide

Surface Coating

Aminosilane

Oligonucleotides Designed

16120

Replicate Oligo Printings

1x

Controls

500 Arabidopsis thaliana 70mers

Annotation Files

The PFGRC provides annotation information in the following formats:

  • Tab-delimited: Which can be opened with most commercial spreadsheet programs.
  • GenePix Array List (GAL) format: For use with the "GenePix Pro" application. More information about the GAL file format can be found here.
  • Ann format: For use with JCVI Spotfinder and JCVI MEV.
  • More information about the format of the annotation files can be found here.
  • The EASE TM4 archive is a zip file archive used in the TM4 suite of applications. More information about this file can be found here.

Strain

Tab-delimited
Text File

.GAL File

.ANN File

EASE TM4
Archive

Sal-1

Download

Download

Download

None

Spotfinder Parameters

The following parameters are for use with JCVI's supported microarray analysis TM4 suite. More information regarding Spotfinder can be found here.

Spotfinder Property

Spotfinder Property

Meta Row

12

Meta Column

4

Pin X (pix)

450

Pin Y (pix)

450

Row Number

20

Column Number

19

X Spacing (pix)

22

Y Spacing (pix)

22

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