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Ginkgo: CGH and Expression Microarray Statistical Analysis and Normalization Platform

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Ginkgo is a spotted microarray data pre-processing platform featuring analysis functionalities for CGH and expression data. This application provides a user-friendly graphical interface that allows viewing, analyzing, generating and reporting microarray data, easily and intuitively. Within the software there are a number of algorithms to address microarray data analysis needs, including normalization, filtering, data imputation, replicates merge, and expression statistical distribution tests.

Feature List

  • Data preprocessing for CGH and expression spotted microarray
  • Replicates analysis and consolidation for in-slide replicates
  • Flip-dye replicates analysis
  • Intuitive graphical user interface
  • Customized PDF analysis report

Download Latest Version

Click here for application: Download Application

This application is released under the GPL v3 License: View License

Click here for source code: Download Source Code

Software Manual

The Ginkgo Manual describes the functionality and operations of this software.

View Manual

System Requirements

Ginkgo v1.0.1 has the following requirements for OS, RAM and disk space:

  • Operating System: Windows 2000/XP/Vista, Linux
  • RAM: 1024 MB
  • Disk Space: 512 MB
  • Java Runtime Environment: Java v1.5.0 or higher.

Download Java v1.6.0

Contact

Contact the PFGRC's Ginkgo Development Team by email: ginkgo@jcvi.org

PFGRC - Pathogen Functional Genomics Resource Center

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